HL_4V5J_218

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCCUUGGG

Length

8 nucleotides

Bulged bases

4V5J|1|AA|U|189|||F, 4V5J|1|AA|G|189|||G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5J_218 not in the Motif Atlas

Geometric match to HL_1FIR_001

Geometric discrepancy: 0.3486

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

4V5J|1|AA|C|189|||B
4V5J|1|AA|C|189|||C
4V5J|1|AA|C|189|||D
4V5J|1|AA|U|189|||E
4V5J|1|AA|U|189|||F
4V5J|1|AA|G|189|||G
4V5J|1|AA|G|189|||H
4V5J|1|AA|G|189|||I

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AQ

30S RIBOSOMAL PROTEIN S17