HL_4V5J_230

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCAGUCGGUAGA

Length

12 nucleotides

Bulged bases

4V5J|1|CW|C|17, 4V5J|1|CW|U|20, 4V5J|1|CW|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5J_230 not in the Motif Atlas

Homologous match to HL_5IB8_207

Geometric discrepancy: 0.3919

The information below is about HL_5IB8_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5J|1|CW|U|12
4V5J|1|CW|C|13
4V5J|1|CW|A|14
4V5J|1|CW|G|15
4V5J|1|CW|U|16
4V5J|1|CW|C|17
4V5J|1|CW|G|18
4V5J|1|CW|G|19
4V5J|1|CW|U|20
4V5J|1|CW|A|21
4V5J|1|CW|G|22
4V5J|1|CW|A|23

Current chains

Chain CW

E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DC

50S RIBOSOMAL PROTEIN L1