HL_4V5K_009

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4V5K|1|AA|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5K_009 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.2182

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V5K|1|AA|C|342
4V5K|1|AA|U|343
4V5K|1|AA|A|344
4V5K|1|AA|C|345
4V5K|1|AA|G|346
4V5K|1|AA|G|347

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain BO

50S RIBOSOMAL PROTEIN L14

Chain BT

50S RIBOSOMAL PROTEIN L19