HL_4V5K_035
3D structure
- PDB id
- 4V5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GCAGCCUGGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 4V5K|1|AW|C|17, 4V5K|1|AW|U|17|||A, 4V5K|1|AW|G|18, 4V5K|1|AW|G|19, 4V5K|1|AW|A|21
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5K_035 not in the Motif Atlas
- Homologous match to HL_5IB8_207
- Geometric discrepancy: 0.5103
- The information below is about HL_5IB8_207
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5K|1|AW|G|12
4V5K|1|AW|C|13
4V5K|1|AW|A|14
4V5K|1|AW|G|15
4V5K|1|AW|C|16
4V5K|1|AW|C|17
4V5K|1|AW|U|17|||A
4V5K|1|AW|G|18
4V5K|1|AW|G|19
4V5K|1|AW|U|20
4V5K|1|AW|A|21
4V5K|1|AW|G|22
4V5K|1|AW|C|23
Current chains
- Chain AW
- E-SITE TRNA PHE OR P-SITE TRNA PHE
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BC
- 50S RIBOSOMAL PROTEIN L1
Coloring options: