HL_4V5K_066

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5K_066 not in the Motif Atlas

Geometric match to HL_4OOG_001

Geometric discrepancy: 0.3142

The information below is about HL_4OOG_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

4V5K|1|BA|G|1171
4V5K|1|BA|G|1173
4V5K|1|BA|A|1174
4V5K|1|BA|U|1175
4V5K|1|BA|G|1176
4V5K|1|BA|A|1177
4V5K|1|BA|C|1178

Current chains

Chain BA

23S ribosomal RNA

Nearby chains