HL_4V5K_132

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCAGCGGUUCGGCCGG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5K|1|CA|C|1128
4V5K|1|CA|C|1129
4V5K|1|CA|A|1130
4V5K|1|CA|G|1131
4V5K|1|CA|C|1132
4V5K|1|CA|G|1133
4V5K|1|CA|G|1134
4V5K|1|CA|U|1135
4V5K|1|CA|U|1136
4V5K|1|CA|C|1137
4V5K|1|CA|G|1138
4V5K|1|CA|G|1139
4V5K|1|CA|C|1140
4V5K|1|CA|C|1141
4V5K|1|CA|G|1142
4V5K|1|CA|G|1143

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CI

30S RIBOSOMAL PROTEIN S9