3D structure

PDB id
4V5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GUGAGAAUC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V5K_174 not in the Motif Atlas
Homologous match to HL_4WF9_032
Geometric discrepancy: 0.0856
The information below is about HL_4WF9_032
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

4V5K|1|DA|G|1281
4V5K|1|DA|U|1282
4V5K|1|DA|G|1283
4V5K|1|DA|A|1284
4V5K|1|DA|G|1285
4V5K|1|DA|A|1286
4V5K|1|DA|A|1287
4V5K|1|DA|U|1288
4V5K|1|DA|C|1289

Current chains

Chain DA
23S ribosomal RNA

Nearby chains

Chain DR
50S RIBOSOMAL PROTEIN L17
Chain DW
50S RIBOSOMAL PROTEIN L22

Coloring options:


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