HL_4V5K_194

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

4V5K|1|DA|G|2206, 4V5K|1|DA|G|2207, 4V5K|1|DA|U|2218

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5K_194 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.2289

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.4

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

4V5K|1|DA|C|2205
4V5K|1|DA|G|2206
4V5K|1|DA|G|2207
4V5K|1|DA|A|2208
4V5K|1|DA|U|2218
4V5K|1|DA|G|2219

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S RIBOSOMAL PROTEIN L28

Chain DD

50S RIBOSOMAL PROTEIN L2

Chain DI

50S RIBOSOMAL PROTEIN L9