HL_4V5K_201

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5K_201 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0992

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

4V5K|1|DA|C|2404
4V5K|1|DA|G|2405
4V5K|1|DA|U|2406
4V5K|1|DA|G|2407
4V5K|1|DA|U|2408
4V5K|1|DA|G|2409
4V5K|1|DA|G|2410
4V5K|1|DA|A|2411
4V5K|1|DA|A|2412
4V5K|1|DA|G|2413

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S RIBOSOMAL PROTEIN L28

Chain DP

50S RIBOSOMAL PROTEIN L15