HL_4V5K_215

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCGUGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5K_215 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2623

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V5K|1|AA|C|1075
4V5K|1|AA|C|1076
4V5K|1|AA|G|1077
4V5K|1|AA|U|1078
4V5K|1|AA|G|1079
4V5K|1|AA|A|1080
4V5K|1|AA|G|1081
4V5K|1|AA|G|1082

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S RIBOSOMAL PROTEIN S2

Chain AE

30S RIBOSOMAL PROTEIN S5