HL_4V5K_218

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UCUGCAACCCGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5K|1|AA|U|1313
4V5K|1|AA|C|1314
4V5K|1|AA|U|1315
4V5K|1|AA|G|1316
4V5K|1|AA|C|1317
4V5K|1|AA|A|1318
4V5K|1|AA|A|1319
4V5K|1|AA|C|1320
4V5K|1|AA|C|1321
4V5K|1|AA|C|1322
4V5K|1|AA|G|1323
4V5K|1|AA|A|1324

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AM

30S RIBOSOMAL PROTEIN S13

Chain AN

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain AS

30S RIBOSOMAL PROTEIN S19

Chain AU

30S RIBOSOMAL PROTEIN THX

Chain B4

50S RIBOSOMAL PROTEIN L31