HL_4V5K_222

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGCGCCUGCGUAGGAUAGGUGGGAGCCUGUGAACCCCCGCCUCCGGGUGGGGGGGAGGCGCCGGUGAAAUACCACCCUGGCGCGG

Length

85 nucleotides

Bulged bases

4V5K|1|BA|G|2112, 4V5K|1|BA|G|2115, 4V5K|1|BA|U|2132, 4V5K|1|BA|G|2133, 4V5K|1|BA|A|2134, 4V5K|1|BA|G|2152

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5K|1|BA|C|2103
4V5K|1|BA|G|2104
4V5K|1|BA|C|2105
4V5K|1|BA|G|2106
4V5K|1|BA|C|2107
4V5K|1|BA|C|2108
4V5K|1|BA|U|2109
4V5K|1|BA|G|2110
4V5K|1|BA|C|2111
4V5K|1|BA|G|2112
4V5K|1|BA|U|2113
4V5K|1|BA|A|2114
4V5K|1|BA|G|2115
4V5K|1|BA|G|2116
4V5K|1|BA|A|2117
4V5K|1|BA|U|2118
4V5K|1|BA|A|2119
4V5K|1|BA|G|2120
4V5K|1|BA|G|2121
4V5K|1|BA|U|2122
4V5K|1|BA|G|2123
4V5K|1|BA|G|2124
4V5K|1|BA|G|2125
4V5K|1|BA|A|2126
4V5K|1|BA|G|2127
4V5K|1|BA|C|2128
4V5K|1|BA|C|2129
4V5K|1|BA|U|2130
4V5K|1|BA|G|2131
4V5K|1|BA|U|2132
4V5K|1|BA|G|2133
4V5K|1|BA|A|2134
4V5K|1|BA|A|2135
4V5K|1|BA|C|2136
4V5K|1|BA|C|2137
4V5K|1|BA|C|2138
4V5K|1|BA|C|2139
4V5K|1|BA|C|2140
4V5K|1|BA|G|2141
4V5K|1|BA|C|2142
4V5K|1|BA|C|2143
4V5K|1|BA|U|2144
4V5K|1|BA|C|2145
4V5K|1|BA|C|2146
4V5K|1|BA|G|2147
4V5K|1|BA|G|2148
4V5K|1|BA|G|2149
4V5K|1|BA|U|2150
4V5K|1|BA|G|2151
4V5K|1|BA|G|2152
4V5K|1|BA|G|2153
4V5K|1|BA|G|2154
4V5K|1|BA|G|2155
4V5K|1|BA|G|2156
4V5K|1|BA|G|2157
4V5K|1|BA|A|2158
4V5K|1|BA|G|2159
4V5K|1|BA|G|2160
4V5K|1|BA|C|2161
4V5K|1|BA|G|2162
4V5K|1|BA|C|2163
4V5K|1|BA|C|2164
4V5K|1|BA|G|2165
4V5K|1|BA|G|2166
4V5K|1|BA|U|2167
4V5K|1|BA|G|2168
4V5K|1|BA|A|2169
4V5K|1|BA|A|2170
4V5K|1|BA|A|2171
4V5K|1|BA|U|2172
4V5K|1|BA|A|2173
4V5K|1|BA|C|2174
4V5K|1|BA|C|2175
4V5K|1|BA|A|2176
4V5K|1|BA|C|2177
4V5K|1|BA|C|2178
4V5K|1|BA|C|2179
4V5K|1|BA|U|2180
4V5K|1|BA|G|2181
4V5K|1|BA|G|2182
4V5K|1|BA|C|2183
4V5K|1|BA|G|2184
4V5K|1|BA|C|2185
4V5K|1|BA|G|2186
4V5K|1|BA|G|2187

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AK

30S RIBOSOMAL PROTEIN S11

Chain AW

Transfer RNA; tRNA

Chain BC

50S RIBOSOMAL PROTEIN L1