HL_4V5K_231
3D structure
- PDB id
- 4V5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCC
- Length
- 66 nucleotides
- Bulged bases
- 4V5K|1|CW|U|8, 4V5K|1|CW|C|16, 4V5K|1|CW|C|17, 4V5K|1|CW|U|17|||A, 4V5K|1|CW|U|20, 4V5K|1|CW|C|34, 4V5K|1|CW|G|46, 4V5K|1|CW|U|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5K|1|CW|G|5
4V5K|1|CW|G|6
4V5K|1|CW|G|7
4V5K|1|CW|U|8
4V5K|1|CW|G|9
4V5K|1|CW|G|10
4V5K|1|CW|A|11
4V5K|1|CW|G|12
4V5K|1|CW|C|13
4V5K|1|CW|A|14
4V5K|1|CW|G|15
4V5K|1|CW|C|16
4V5K|1|CW|C|17
4V5K|1|CW|U|17|||A
4V5K|1|CW|G|18
4V5K|1|CW|G|19
4V5K|1|CW|U|20
4V5K|1|CW|A|21
4V5K|1|CW|G|22
4V5K|1|CW|C|23
4V5K|1|CW|U|24
4V5K|1|CW|C|25
4V5K|1|CW|G|26
4V5K|1|CW|U|27
4V5K|1|CW|C|28
4V5K|1|CW|G|29
4V5K|1|CW|G|30
4V5K|1|CW|G|31
4V5K|1|CW|C|32
4V5K|1|CW|U|33
4V5K|1|CW|C|34
4V5K|1|CW|A|35
4V5K|1|CW|U|36
4V5K|1|CW|A|37
4V5K|1|CW|A|38
4V5K|1|CW|C|39
4V5K|1|CW|C|40
4V5K|1|CW|C|41
4V5K|1|CW|G|42
4V5K|1|CW|A|43
4V5K|1|CW|A|44
4V5K|1|CW|G|45
4V5K|1|CW|G|46
4V5K|1|CW|U|47
4V5K|1|CW|C|48
4V5K|1|CW|G|49
4V5K|1|CW|U|50
4V5K|1|CW|C|51
4V5K|1|CW|G|52
4V5K|1|CW|G|53
4V5K|1|CW|U|54
4V5K|1|CW|U|55
4V5K|1|CW|C|56
4V5K|1|CW|A|57
4V5K|1|CW|A|58
4V5K|1|CW|A|59
4V5K|1|CW|U|60
4V5K|1|CW|C|61
4V5K|1|CW|C|62
4V5K|1|CW|G|63
4V5K|1|CW|G|64
4V5K|1|CW|C|65
4V5K|1|CW|C|66
4V5K|1|CW|C|67
4V5K|1|CW|C|68
4V5K|1|CW|C|69
Current chains
- Chain CW
- E-SITE TRNA PHE OR P-SITE TRNA PHE
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CG
- 30S RIBOSOMAL PROTEIN S7
- Chain CK
- 30S RIBOSOMAL PROTEIN S11
- Chain CV
- Transfer RNA; tRNA
- Chain CX
- MRNA
- Chain D6
- 50S RIBOSOMAL PROTEIN L33
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DC
- 50S RIBOSOMAL PROTEIN L1
Coloring options: