HL_4V5K_233

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGCCCACCAGCC

Length

12 nucleotides

Bulged bases

4V5K|1|DA|A|887, 4V5K|1|DA|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5K|1|DA|G|882
4V5K|1|DA|G|883
4V5K|1|DA|C|884
4V5K|1|DA|C|885
4V5K|1|DA|C|886
4V5K|1|DA|A|887
4V5K|1|DA|C|888
4V5K|1|DA|C|889
4V5K|1|DA|A|890
4V5K|1|DA|G|892
4V5K|1|DA|C|893
4V5K|1|DA|C|894

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CM

30S RIBOSOMAL PROTEIN S13

Chain CS

30S RIBOSOMAL PROTEIN S19

Chain DZ

50S RIBOSOMAL PROTEIN L25