Loop HL_4V5K

3D structure

PDB id: 4V5K (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å

Loop

Sequence: UACAAAGCGAUGCCACCCGGCAACGGGGAGCUAAUCGCAAAAAG
Length: 44 nucleotides
Bulged bases: 4V5K|1|AA|U|1257, 4V5K|1|AA|A|1280, 4V5K|1|AA|U|1281, 4V5K|1|AA|A|1286
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V5K|1|AA|U|1247
4V5K|1|AA|A|1248
4V5K|1|AA|C|1249
4V5K|1|AA|A|1250
4V5K|1|AA|A|1251
4V5K|1|AA|A|1252
4V5K|1|AA|G|1253
4V5K|1|AA|C|1254
4V5K|1|AA|G|1255
4V5K|1|AA|A|1256
4V5K|1|AA|U|1257
4V5K|1|AA|G|1258
4V5K|1|AA|C|1259
4V5K|1|AA|C|1260
4V5K|1|AA|A|1261
4V5K|1|AA|C|1262
4V5K|1|AA|C|1263
4V5K|1|AA|C|1264
4V5K|1|AA|G|1265
4V5K|1|AA|G|1266
4V5K|1|AA|C|1267
4V5K|1|AA|A|1268
4V5K|1|AA|A|1269
4V5K|1|AA|C|1270
4V5K|1|AA|G|1271
4V5K|1|AA|G|1272
4V5K|1|AA|G|1273
4V5K|1|AA|G|1274
4V5K|1|AA|A|1275
4V5K|1|AA|G|1276
4V5K|1|AA|C|1277
4V5K|1|AA|U|1278
4V5K|1|AA|A|1279
4V5K|1|AA|A|1280
4V5K|1|AA|U|1281
4V5K|1|AA|C|1282
4V5K|1|AA|G|1283
4V5K|1|AA|C|1284
4V5K|1|AA|A|1285
4V5K|1|AA|A|1286
4V5K|1|AA|A|1287
4V5K|1|AA|A|1288
4V5K|1|AA|A|1289
4V5K|1|AA|G|1290

Current chains

Chain AA: 16S ribosomal RNA

Nearby chains

Chain AC: 30S RIBOSOMAL PROTEIN S3
Chain AG: 30S RIBOSOMAL PROTEIN S7
Chain AI: 30S RIBOSOMAL PROTEIN S9
Chain AJ: 30S RIBOSOMAL PROTEIN S10
Chain AM: 30S RIBOSOMAL PROTEIN S13
Chain AN: 30S RIBOSOMAL PROTEIN S14 TYPE Z
Chain AS: 30S RIBOSOMAL PROTEIN S19
Chain AU: 30S RIBOSOMAL PROTEIN THX

HL_4V5K_238