HL_4V5L_020

3D structure

PDB id

4V5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5L_020 not in the Motif Atlas

Homologous match to HL_4LFB_020

Geometric discrepancy: 0.0738

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4V5L|1|AA|C|897
4V5L|1|AA|G|898
4V5L|1|AA|C|899
4V5L|1|AA|A|900
4V5L|1|AA|A|901
4V5L|1|AA|G|902

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AQ

30S RIBOSOMAL PROTEIN S17

Chain BA

Large subunit ribosomal RNA; LSU rRNA