HL_4V5L_094

3D structure

PDB id

4V5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V5L|1|BA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5L_094 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.115

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V5L|1|BA|C|2248
4V5L|1|BA|U|2249
4V5L|1|BA|G|2250
4V5L|1|BA|G|2251
4V5L|1|BA|G|2252
4V5L|1|BA|G|2253
4V5L|1|BA|C|2254
4V5L|1|BA|G|2255
4V5L|1|BA|G|2256

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain B0

50S RIBOSOMAL PROTEIN L27

Chain BQ

50S RIBOSOMAL PROTEIN L16