HL_4V5L_123

3D structure

PDB id

4V5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUGAAAGCAUCUAAGC

Length

17 nucleotides

Bulged bases

4V5L|1|BA|G|2751, 4V5L|1|BA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5L_123 not in the Motif Atlas

Homologous match to HL_7A0S_074

Geometric discrepancy: 0.232

The information below is about HL_7A0S_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28904.1

Basepair signature

cWW-F-F-tWH-cWH-tSH-tHW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4V5L|1|BA|G|2744
4V5L|1|BA|C|2745
4V5L|1|BA|U|2746
4V5L|1|BA|G|2747
4V5L|1|BA|A|2748
4V5L|1|BA|A|2749
4V5L|1|BA|A|2750
4V5L|1|BA|G|2751
4V5L|1|BA|C|2752
4V5L|1|BA|A|2753
4V5L|1|BA|U|2754
4V5L|1|BA|C|2755
4V5L|1|BA|U|2756
4V5L|1|BA|A|2757
4V5L|1|BA|A|2758
4V5L|1|BA|G|2759
4V5L|1|BA|C|2760

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B9

50S RIBOSOMAL PROTEIN L36

Chain BH

50S RIBOSOMAL PROTEIN L6

Chain BN

50S RIBOSOMAL PROTEIN L13