HL_4V5N_008

3D structure

PDB id

4V5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

4V5N|1|AA|C|330, 4V5N|1|AA|G|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5N_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1109

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V5N|1|AA|C|320
4V5N|1|AA|A|321
4V5N|1|AA|C|322
4V5N|1|AA|U|323
4V5N|1|AA|G|324
4V5N|1|AA|A|325
4V5N|1|AA|G|326
4V5N|1|AA|A|327
4V5N|1|AA|C|328
4V5N|1|AA|A|329
4V5N|1|AA|C|330
4V5N|1|AA|G|331
4V5N|1|AA|G|332
4V5N|1|AA|G|333

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AP

30S RIBOSOMAL PROTEIN S16

Chain AT

30S RIBOSOMAL PROTEIN S20