HL_4V5P_052
3D structure
- PDB id
- 4V5P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAAAGCC
- Length
- 9 nucleotides
- Bulged bases
- 4V5P|1|BA|G|329, 4V5P|1|BA|A|330, 4V5P|1|BA|A|331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5P_052 not in the Motif Atlas
- Homologous match to HL_7RQB_012
- Geometric discrepancy: 0.1546
- The information below is about HL_7RQB_012
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.9
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 19
Unit IDs
4V5P|1|BA|G|327
4V5P|1|BA|U|328
4V5P|1|BA|G|329
4V5P|1|BA|A|330
4V5P|1|BA|A|331
4V5P|1|BA|A|332
4V5P|1|BA|G|333
4V5P|1|BA|C|334
4V5P|1|BA|C|335
Current chains
- Chain BA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain BF
- 50S RIBOSOMAL PROTEIN L4
- Chain BY
- 50S RIBOSOMAL PROTEIN L24
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