HL_4V5P_236

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGCGCAAGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5P_236 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3052

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V5P|1|CA|G|377
4V5P|1|CA|G|378
4V5P|1|CA|C|379
4V5P|1|CA|G|380
4V5P|1|CA|C|381
4V5P|1|CA|A|382
4V5P|1|CA|A|383
4V5P|1|CA|G|384
4V5P|1|CA|C|385
4V5P|1|CA|C|386

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CP

30S RIBOSOMAL PROTEIN S16