HL_4V5Q_119

3D structure

PDB id

4V5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Q_119 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0845

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V5Q|1|CA|C|320
4V5Q|1|CA|A|321
4V5Q|1|CA|C|322
4V5Q|1|CA|U|323
4V5Q|1|CA|G|324
4V5Q|1|CA|A|325
4V5Q|1|CA|G|326
4V5Q|1|CA|A|327
4V5Q|1|CA|C|328
4V5Q|1|CA|A|329
4V5Q|1|CA|C|330
4V5Q|1|CA|G|331
4V5Q|1|CA|G|332
4V5Q|1|CA|G|333

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CP

30S RIBOSOMAL PROTEIN S16

Chain CT

30S RIBOSOMAL PROTEIN S20