HL_4V5Q_122

3D structure

PDB id

4V5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V5Q|1|CA|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Q_122 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.2117

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V5Q|1|CA|C|419
4V5Q|1|CA|U|420
4V5Q|1|CA|U|421
4V5Q|1|CA|C|422
4V5Q|1|CA|G|423
4V5Q|1|CA|G|424

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CC

30S RIBOSOMAL PROTEIN S3

Chain CD

30S RIBOSOMAL PROTEIN S4