HL_4V5Q_189

3D structure

PDB id

4V5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Q_189 not in the Motif Atlas

Geometric match to HL_3AM1_002

Geometric discrepancy: 0.3186

The information below is about HL_3AM1_002

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V5Q|1|DA|C|1532
4V5Q|1|DA|G|1533
4V5Q|1|DA|U|1534
4V5Q|1|DA|A|1535
4V5Q|1|DA|C|1536
4V5Q|1|DA|G|1537

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains