HL_4V5Q_215

3D structure

PDB id

4V5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Q_215 not in the Motif Atlas

Homologous match to HL_7RQB_064

Geometric discrepancy: 0.1153

The information below is about HL_7RQB_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V5Q|1|DA|C|2658
4V5Q|1|DA|G|2659
4V5Q|1|DA|A|2660
4V5Q|1|DA|G|2661
4V5Q|1|DA|A|2662
4V5Q|1|DA|G|2663

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CY

Transfer RNA; tRNA

Chain CZ

ELONGATION FACTOR TU

Chain DH

50S RIBOSOMAL PROTEIN L6