3D structure

PDB id
4V5Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GCGGCGAAGACAGCCAGGAGGUUGGCUUAGAAGCAGCCAUCCUUUAAAGAGUGCGUAAUAGCUCACUGGUCGAGUGGC
Length
78 nucleotides
Bulged bases
4V5Q|1|BA|A|1045, 4V5Q|1|BA|A|1046, 4V5Q|1|BA|U|1061, 4V5Q|1|BA|U|1066, 4V5Q|1|BA|A|1070, 4V5Q|1|BA|U|1078, 4V5Q|1|BA|A|1084
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V5Q|1|BA|G|1039
4V5Q|1|BA|C|1040
4V5Q|1|BA|G|1041
4V5Q|1|BA|G|1042
4V5Q|1|BA|C|1043
4V5Q|1|BA|G|1044
4V5Q|1|BA|A|1045
4V5Q|1|BA|A|1046
4V5Q|1|BA|G|1047
4V5Q|1|BA|A|1048
4V5Q|1|BA|C|1049
4V5Q|1|BA|A|1050
4V5Q|1|BA|G|1051
4V5Q|1|BA|C|1052
4V5Q|1|BA|C|1053
4V5Q|1|BA|A|1054
4V5Q|1|BA|G|1055
4V5Q|1|BA|G|1056
4V5Q|1|BA|A|1057
4V5Q|1|BA|G|1058
4V5Q|1|BA|G|1059
4V5Q|1|BA|U|1060
4V5Q|1|BA|U|1061
4V5Q|1|BA|G|1062
4V5Q|1|BA|G|1063
4V5Q|1|BA|C|1064
4V5Q|1|BA|U|1065
4V5Q|1|BA|U|1066
4V5Q|1|BA|A|1067
4V5Q|1|BA|G|1068
4V5Q|1|BA|A|1069
4V5Q|1|BA|A|1070
4V5Q|1|BA|G|1071
4V5Q|1|BA|C|1072
4V5Q|1|BA|A|1073
4V5Q|1|BA|G|1074
4V5Q|1|BA|C|1075
4V5Q|1|BA|C|1076
4V5Q|1|BA|A|1077
4V5Q|1|BA|U|1078
4V5Q|1|BA|C|1079
4V5Q|1|BA|C|1080
4V5Q|1|BA|U|1081
4V5Q|1|BA|U|1082
4V5Q|1|BA|U|1083
4V5Q|1|BA|A|1084
4V5Q|1|BA|A|1085
4V5Q|1|BA|A|1086
4V5Q|1|BA|G|1087
4V5Q|1|BA|A|1088
4V5Q|1|BA|G|1089
4V5Q|1|BA|U|1090
4V5Q|1|BA|G|1091
4V5Q|1|BA|C|1092
4V5Q|1|BA|G|1093
4V5Q|1|BA|U|1094
4V5Q|1|BA|A|1095
4V5Q|1|BA|A|1096
4V5Q|1|BA|U|1097
4V5Q|1|BA|A|1098
4V5Q|1|BA|G|1099
4V5Q|1|BA|C|1100
4V5Q|1|BA|U|1101
4V5Q|1|BA|C|1102
4V5Q|1|BA|A|1103
4V5Q|1|BA|C|1104
4V5Q|1|BA|U|1105
4V5Q|1|BA|G|1106
4V5Q|1|BA|G|1107
4V5Q|1|BA|U|1108
4V5Q|1|BA|C|1109
4V5Q|1|BA|G|1110
4V5Q|1|BA|A|1111
4V5Q|1|BA|G|1112
4V5Q|1|BA|U|1113
4V5Q|1|BA|G|1114
4V5Q|1|BA|G|1115
4V5Q|1|BA|C|1116

Current chains

Chain BA
23S RIBOSOMAL RNA

Nearby chains

Chain AY
Transfer RNA; tRNA
Chain B9
50S RIBOSOMAL PROTEIN L36
Chain BH
50S RIBOSOMAL PROTEIN L6
Chain BJ
50S RIBOSOMAL PROTEIN L10
Chain BK
50S RIBOSOMAL PROTEIN L11
Chain BQ
50S RIBOSOMAL PROTEIN L16
Chain BZ
50S RIBOSOMAL PROTEIN L25

Coloring options:

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