HL_4V5Q_242

3D structure

PDB id

4V5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGCCCACCAGCC

Length

12 nucleotides

Bulged bases

4V5Q|1|DA|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Q_242 not in the Motif Atlas

Geometric match to HL_5UD5_001

Geometric discrepancy: 0.2335

The information below is about HL_5UD5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

4V5Q|1|DA|G|882
4V5Q|1|DA|G|883
4V5Q|1|DA|C|884
4V5Q|1|DA|C|885
4V5Q|1|DA|C|886
4V5Q|1|DA|A|887
4V5Q|1|DA|C|888
4V5Q|1|DA|C|889
4V5Q|1|DA|A|890
4V5Q|1|DA|G|892
4V5Q|1|DA|C|893
4V5Q|1|DA|C|894

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CM

30S RIBOSOMAL PROTEIN S13

Chain CS

30S RIBOSOMAL PROTEIN S19