HL_4V5S_028

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5S_028 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.0913

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V5S|1|AA|C|1314
4V5S|1|AA|U|1315
4V5S|1|AA|G|1316
4V5S|1|AA|C|1317
4V5S|1|AA|A|1318
4V5S|1|AA|A|1319
4V5S|1|AA|C|1320
4V5S|1|AA|C|1321
4V5S|1|AA|C|1322
4V5S|1|AA|G|1323

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AM

30S RIBOSOMAL PROTEIN S13

Chain AN

30S RIBOSOMAL PROTEIN S14

Chain AS

30S RIBOSOMAL PROTEIN S19