HL_4V5S_150
3D structure
- PDB id
- 4V5S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- U(OMC)UCCA(MIA)AA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5S_150 not in the Motif Atlas
- Homologous match to HL_5IBB_210
- Geometric discrepancy: 0.2143
- The information below is about HL_5IBB_210
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
4V5S|1|CY|U|31
4V5S|1|CY|OMC|32
4V5S|1|CY|U|33
4V5S|1|CY|C|34
4V5S|1|CY|C|35
4V5S|1|CY|A|36
4V5S|1|CY|MIA|37
4V5S|1|CY|A|38
4V5S|1|CY|A|39
Current chains
- Chain CY
- A-SITE TRNA G24A TRP-TRNA TRP
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CL
- 30S RIBOSOMAL PROTEIN S12
- Chain CM
- 30S RIBOSOMAL PROTEIN S13
- Chain CX
- MRNA
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
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