HL_4V5S_233

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGGGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5S_233 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3311

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V5S|1|BA|C|486
4V5S|1|BA|C|487
4V5S|1|BA|G|488
4V5S|1|BA|G|489
4V5S|1|BA|G|491
4V5S|1|BA|A|492
4V5S|1|BA|G|493
4V5S|1|BA|G|494

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BW

50S RIBOSOMAL PROTEIN L22