Loop HL_4V5S

3D structure

PDB id: 4V5S (explore in PDB, NAKB, or RNA 3D Hub)
Description: The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å

Loop

Sequence: AGGAGGUUGGCUUAGAAGCAGCCAUCCUUUAAAGAGUGCGUAAUAGCUCACU
Length: 52 nucleotides
Bulged bases: 4V5S|1|BA|U|1066, 4V5S|1|BA|U|1078
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V5S|1|BA|A|1054
4V5S|1|BA|G|1055
4V5S|1|BA|G|1056
4V5S|1|BA|A|1057
4V5S|1|BA|G|1058
4V5S|1|BA|G|1059
4V5S|1|BA|U|1060
4V5S|1|BA|U|1061
4V5S|1|BA|G|1062
4V5S|1|BA|G|1063
4V5S|1|BA|C|1064
4V5S|1|BA|U|1065
4V5S|1|BA|U|1066
4V5S|1|BA|A|1067
4V5S|1|BA|G|1068
4V5S|1|BA|A|1069
4V5S|1|BA|A|1070
4V5S|1|BA|G|1071
4V5S|1|BA|C|1072
4V5S|1|BA|A|1073
4V5S|1|BA|G|1074
4V5S|1|BA|C|1075
4V5S|1|BA|C|1076
4V5S|1|BA|A|1077
4V5S|1|BA|U|1078
4V5S|1|BA|C|1079
4V5S|1|BA|C|1080
4V5S|1|BA|U|1081
4V5S|1|BA|U|1082
4V5S|1|BA|U|1083
4V5S|1|BA|A|1084
4V5S|1|BA|A|1085
4V5S|1|BA|A|1086
4V5S|1|BA|G|1087
4V5S|1|BA|A|1088
4V5S|1|BA|G|1089
4V5S|1|BA|U|1090
4V5S|1|BA|G|1091
4V5S|1|BA|C|1092
4V5S|1|BA|G|1093
4V5S|1|BA|U|1094
4V5S|1|BA|A|1095
4V5S|1|BA|A|1096
4V5S|1|BA|U|1097
4V5S|1|BA|A|1098
4V5S|1|BA|G|1099
4V5S|1|BA|C|1100
4V5S|1|BA|U|1101
4V5S|1|BA|C|1102
4V5S|1|BA|A|1103
4V5S|1|BA|C|1104
4V5S|1|BA|U|1105

Current chains

Chain BA: 23S RIBOSOMAL RNA

Nearby chains

Chain AY: Transfer RNA; tRNA
Chain B9: 50S RIBOSOMAL PROTEIN L36
Chain BH: 50S RIBOSOMAL PROTEIN L6
Chain BJ: 50S RIBOSOMAL PROTEIN L10
Chain BK: 50S RIBOSOMAL PROTEIN L11
Chain BQ: 50S RIBOSOMAL PROTEIN L16
Chain BZ: 50S RIBOSOMAL PROTEIN L25

HL_4V5S_235