HL_4V5S_248

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCCGGGAGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5S_248 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3451

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V5S|1|DA|C|485
4V5S|1|DA|C|486
4V5S|1|DA|C|487
4V5S|1|DA|G|488
4V5S|1|DA|G|489
4V5S|1|DA|G|491
4V5S|1|DA|A|492
4V5S|1|DA|G|493
4V5S|1|DA|G|494
4V5S|1|DA|G|495

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DW

50S RIBOSOMAL PROTEIN L22

Chain DY

50S RIBOSOMAL PROTEIN L24