HL_4V5S_251

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUGAAAGCAUCUAAGC

Length

17 nucleotides

Bulged bases

4V5S|1|DA|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5S_251 not in the Motif Atlas

Homologous match to HL_7A0S_074

Geometric discrepancy: 0.2341

The information below is about HL_7A0S_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28904.1

Basepair signature

cWW-F-F-tWH-cWH-tSH-tHW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4V5S|1|DA|G|2744
4V5S|1|DA|C|2745
4V5S|1|DA|U|2746
4V5S|1|DA|G|2747
4V5S|1|DA|A|2748
4V5S|1|DA|A|2749
4V5S|1|DA|A|2750
4V5S|1|DA|G|2751
4V5S|1|DA|C|2752
4V5S|1|DA|A|2753
4V5S|1|DA|U|2754
4V5S|1|DA|C|2755
4V5S|1|DA|U|2756
4V5S|1|DA|A|2757
4V5S|1|DA|A|2758
4V5S|1|DA|G|2759
4V5S|1|DA|C|2760

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D9

50S RIBOSOMAL PROTEIN L36

Chain DH

50S RIBOSOMAL PROTEIN L6

Chain DN

50S RIBOSOMAL PROTEIN L13