HL_4V5Y_009

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4V5Y|1|AA|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Y_009 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.1276

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

4V5Y|1|AA|C|342
4V5Y|1|AA|U|343
4V5Y|1|AA|A|344
4V5Y|1|AA|C|345
4V5Y|1|AA|G|346
4V5Y|1|AA|G|347

Current chains

Chain AA

16S rRNA

Nearby chains

Chain BK

50S ribosomal protein L14

Chain BP

50S ribosomal protein L19