HL_4V5Y_042

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Y_042 not in the Motif Atlas

Homologous match to HL_5J7L_141

Geometric discrepancy: 0.096

The information below is about HL_5J7L_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

4V5Y|1|BB|C|246
4V5Y|1|BB|G|247
4V5Y|1|BB|G|248
4V5Y|1|BB|C|249
4V5Y|1|BB|G|250
4V5Y|1|BB|A|251
4V5Y|1|BB|G|252

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BL

50S ribosomal protein L15

Chain BZ

50S ribosomal protein L28