HL_4V5Y_057

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

4V5Y|1|BB|A|781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Y_057 not in the Motif Atlas

Homologous match to HL_4WF9_024

Geometric discrepancy: 0.3107

The information below is about HL_4WF9_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

4V5Y|1|BB|U|779
4V5Y|1|BB|G|780
4V5Y|1|BB|A|781
4V5Y|1|BB|A|782
4V5Y|1|BB|A|783
4V5Y|1|BB|G|784
4V5Y|1|BB|G|785

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2