HL_4V5Y_061

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Y_061 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.2484

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4V5Y|1|BB|G|978
4V5Y|1|BB|A|979
4V5Y|1|BB|A|980
4V5Y|1|BB|A|981
4V5Y|1|BB|C|982
4V5Y|1|BB|A|983
4V5Y|1|BB|A|984
4V5Y|1|BB|C|985

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BR

50S ribosomal protein L21

Chain BY

50S ribosomal protein L30