HL_4V5Y_092

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Y_092 not in the Motif Atlas

Homologous match to HL_4WF9_054

Geometric discrepancy: 0.1108

The information below is about HL_4WF9_054

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V5Y|1|BB|C|2374
4V5Y|1|BB|G|2375
4V5Y|1|BB|A|2376
4V5Y|1|BB|A|2377
4V5Y|1|BB|A|2378
4V5Y|1|BB|G|2379

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BO

50S ribosomal protein L18