HL_4V5Y_123

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Y_123 not in the Motif Atlas

Homologous match to HL_4LFB_020

Geometric discrepancy: 0.1205

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V5Y|1|CA|C|897
4V5Y|1|CA|G|898
4V5Y|1|CA|C|899
4V5Y|1|CA|A|900
4V5Y|1|CA|A|901
4V5Y|1|CA|G|902

Current chains

Chain CA

16S rRNA

Nearby chains

Chain DB

Large subunit ribosomal RNA; LSU rRNA