HL_4V5Y_126

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V5Y|1|CA|U|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Y_126 not in the Motif Atlas

Geometric match to HL_5J7L_030

Geometric discrepancy: 0.2556

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V5Y|1|CA|C|1028
4V5Y|1|CA|U|1029
4V5Y|1|CA|U|1030
4V5Y|1|CA|C|1031
4V5Y|1|CA|G|1032
4V5Y|1|CA|G|1033

Current chains

Chain CA

16S rRNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA