HL_4V5Y_162

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

GCAACAACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Y_162 not in the Motif Atlas

Geometric match to HL_4JXZ_002

Geometric discrepancy: 0.3916

The information below is about HL_4JXZ_002

Detailed Annotation

tRNA anticodon loop with synthetase

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

4V5Y|1|DB|G|875
4V5Y|1|DB|C|876
4V5Y|1|DB|A|877
4V5Y|1|DB|A|878
4V5Y|1|DB|C|898
4V5Y|1|DB|A|899
4V5Y|1|DB|A|900
4V5Y|1|DB|C|901
4V5Y|1|DB|C|902

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L16