HL_4V5Y_173

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

GGCGACGGUUGUCC

Length

14 nucleotides

Bulged bases

4V5Y|1|DB|A|1453, 4V5Y|1|DB|G|1459, 4V5Y|1|DB|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5Y|1|DB|G|1449
4V5Y|1|DB|G|1450
4V5Y|1|DB|C|1451
4V5Y|1|DB|G|1452
4V5Y|1|DB|A|1453
4V5Y|1|DB|C|1454
4V5Y|1|DB|G|1455
4V5Y|1|DB|G|1456
4V5Y|1|DB|U|1457
4V5Y|1|DB|U|1458
4V5Y|1|DB|G|1459
4V5Y|1|DB|U|1460
4V5Y|1|DB|C|1461
4V5Y|1|DB|C|1462

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DN

50S ribosomal protein L17