HL_4V5Y_206

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5Y_206 not in the Motif Atlas

Homologous match to HL_7A0S_068

Geometric discrepancy: 0.1347

The information below is about HL_7A0S_068

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V5Y|1|DB|A|2856
4V5Y|1|DB|G|2857
4V5Y|1|DB|C|2858
4V5Y|1|DB|G|2859
4V5Y|1|DB|A|2860
4V5Y|1|DB|U|2861

Current chains

Chain DB

23S rRNA

Nearby chains