HL_4V63_099

3D structure

PDB id

4V63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for translation termination on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

4V63|1|BA|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V63_099 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.1261

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

4V63|1|BA|C|2404
4V63|1|BA|G|2405
4V63|1|BA|U|2406
4V63|1|BA|G|2407
4V63|1|BA|U|2408
4V63|1|BA|G|2409
4V63|1|BA|G|2410
4V63|1|BA|A|2411
4V63|1|BA|A|2412
4V63|1|BA|G|2413

Current chains

Chain BA

23S RRNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BP

50S ribosomal protein L15