HL_4V63_120

3D structure

PDB id

4V63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for translation termination on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V63_120 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1455

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V63|1|CA|C|320
4V63|1|CA|A|321
4V63|1|CA|C|322
4V63|1|CA|U|323
4V63|1|CA|G|324
4V63|1|CA|A|325
4V63|1|CA|G|326
4V63|1|CA|A|327
4V63|1|CA|C|328
4V63|1|CA|A|329
4V63|1|CA|C|330
4V63|1|CA|G|331
4V63|1|CA|G|332
4V63|1|CA|G|333

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CT

30S ribosomal protein S20