HL_4V63_187

3D structure

PDB id

4V63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for translation termination on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

CCAUGGACGAG

Length

11 nucleotides

Bulged bases

4V63|1|DA|U|1454, 4V63|1|DA|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V63_187 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.4441

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V63|1|DA|C|1450
4V63|1|DA|C|1451
4V63|1|DA|A|1453
4V63|1|DA|U|1454
4V63|1|DA|G|1455
4V63|1|DA|G|1456
4V63|1|DA|A|1457
4V63|1|DA|C|1458
4V63|1|DA|G|1459
4V63|1|DA|A|1460
4V63|1|DA|G|1461

Current chains

Chain DA

23S RRNA

Nearby chains

Chain DR

50S ribosomal protein L17