HL_4V63_219

3D structure

PDB id

4V63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for translation termination on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GAAGACUAC

Length

9 nucleotides

Bulged bases

4V63|1|DA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V63_219 not in the Motif Atlas

Homologous match to HL_7A0S_067

Geometric discrepancy: 0.1375

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4V63|1|DA|G|2819
4V63|1|DA|A|2820
4V63|1|DA|A|2821
4V63|1|DA|G|2822
4V63|1|DA|A|2823
4V63|1|DA|C|2824
4V63|1|DA|U|2825
4V63|1|DA|A|2826
4V63|1|DA|C|2827

Current chains

Chain DA

23S RRNA

Nearby chains

Chain DE

50S ribosomal protein L3

Chain DR

50S ribosomal protein L17