HL_4V64_047

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

4V64|1|BB|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V64_047 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.079

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V64|1|BB|G|410
4V64|1|BB|G|411
4V64|1|BB|A|412
4V64|1|BB|C|413
4V64|1|BB|C|414
4V64|1|BB|A|415
4V64|1|BB|U|416
4V64|1|BB|C|417

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L15