HL_4V64_056

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGUUGAAAAA

Length

10 nucleotides

Bulged bases

4V64|1|BB|U|747, 4V64|1|BB|A|751, 4V64|1|BB|A|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V64_056 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.1016

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

4V64|1|BB|U|744
4V64|1|BB|G|745
4V64|1|BB|U|746
4V64|1|BB|U|747
4V64|1|BB|G|748
4V64|1|BB|A|749
4V64|1|BB|A|750
4V64|1|BB|A|751
4V64|1|BB|A|752
4V64|1|BB|A|753

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain B2

50S ribosomal protein L34

Chain BD

50S ribosomal protein L3

Chain BS

50S ribosomal protein L22