HL_4V64_112

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4V64|1|CA|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V64_112 not in the Motif Atlas

Homologous match to HL_5J7L_009

Geometric discrepancy: 0.1345

The information below is about HL_5J7L_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V64|1|CA|C|342
4V64|1|CA|U|343
4V64|1|CA|A|344
4V64|1|CA|C|345
4V64|1|CA|G|346
4V64|1|CA|G|347

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain DK

50S ribosomal protein L14

Chain DP

50S ribosomal protein L19